Pangenome Analysis
Pangenome Analysis can be used for comparing user-provided genome
with
those in RhizobiaWiki. The users can upload their genome as genomics fasta files. To reduce the calculation time,
users can choose the genus using the icon below to limit the reference strain in RhizobiaWiki.
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A pangenome is a collection of genome sequences from many individuals of the same species. Scientists generate pangenomes to capture the breadth of genomic variation across populations. In bacterial field, the pangenome also focused on the evolutionary of gene content (gain and loss of specific genes).
The pipeline is modified based on orthofinder2 pipeline.(Emms et al., 2019)
The pipeline is modified based on orthofinder2 pipeline.(Emms et al., 2019)
Tips:
You can choose to upload only the genome file from the database, or you can choose to upload your own genome file as well as the genome file from the database. Click here to view an example of the uploaded genome file from the database. Click here to view an example of the uploaded your own genome faa file. The maximum size for input file is 30 MB. Please refer to the detailed documentation of this tool.
You can choose to upload only the genome file from the database, or you can choose to upload your own genome file as well as the genome file from the database. Click here to view an example of the uploaded genome file from the database. Click here to view an example of the uploaded your own genome faa file. The maximum size for input file is 30 MB. Please refer to the detailed documentation of this tool.
Successful Submission!
Dear User:
We have received your task and assigned a Job ID for your task, you can get the analysis results with the Job ID. Please record your Job ID and the Job ID Link, it's the only way to get the results. The task takes some moment, and the analysis results will be retained for 24 hours.
We have received your task and assigned a Job ID for your task, you can get the analysis results with the Job ID. Please record your Job ID and the Job ID Link, it's the only way to get the results. The task takes some moment, and the analysis results will be retained for 24 hours.
| Job ID | 12312414134 |
| Job ID Link | 12312414134 |
| Submission Time | 12121212 |