ANI Tool
ANI Tool can be used for comparing user-provided genome with those in
RhizobiaWiki. The users can upload their genome as genomics fasta files. To reduce the calculation time, users can
choose the genus using the icon below to limit the reference strain in RhizobiaWiki.
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ANI values are usually expressed as percentages and reflect the proportion of nucleotide sequences in the same region in both genomes. The higher the value, the more similar the two genomes are. Typically, the ANI values between genomes of the same species are above 95% (Jain et al., 2018). We apply this threshold to assign species to the query genome. The reference genome for each species is the genome in ‘species’ section of RhizobiaWiki.
The tool is based on MUMmer.
Tips:
Please refer to the Example Genome file input. The maximum size for input file is 30 MB. For reduce calculation time, it was strongly recommended that the user choose particular genus library instead of 'All'. As estimated, the ANI calculation may take for ~20 mins to complete. Please refer to the detailed documentation of this tool.
Please refer to the Example Genome file input. The maximum size for input file is 30 MB. For reduce calculation time, it was strongly recommended that the user choose particular genus library instead of 'All'. As estimated, the ANI calculation may take for ~20 mins to complete. Please refer to the detailed documentation of this tool.
Successful Submission!
Dear User:
We have received your task and assigned a Job ID for your task, you can get the analysis results with the Job ID. Please record your Job ID and the Job ID Link, it's the only way to get the results. The task takes some moment, and the analysis results will be retained for 24 hours.
We have received your task and assigned a Job ID for your task, you can get the analysis results with the Job ID. Please record your Job ID and the Job ID Link, it's the only way to get the results. The task takes some moment, and the analysis results will be retained for 24 hours.
| Job ID | 12312414134 |
| Job ID Link | 12312414134 |
| Submission Time | 12121212 |