Transcriptome

Transcriptome related to strains in RhizobiaWiki.

PRJNA470887

Basic Information:

Title:NA

Accession:NA

PMID:NA

Bio-source:lalalallala

Treatment:ASASASSAS

Ref-genome:Rhizobium tropici CIAT 899

Description:NA

Mapping statistics:

Count statistics:

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Gene
Annotation
SRR7145598
SRR7145599
SRR7145698
SRR7145723
RTCIAT899_CH00005putative phosphotransferase1122
RTCIAT899_CH00010hypothetical protein0010
RTCIAT899_CH00015shikimate 5-dehydrogenase1100
RTCIAT899_CH00020dephospho-CoA kinase0201
RTCIAT899_CH00025DNA polymerase III, epsilon subunit3383
RTCIAT899_CH00030protein-export chaperone SecB5995
RTCIAT899_CH00035FxsA cytoplasmic membrane protein2141
RTCIAT899_CH00040import inner membrane translocase subunit Tim443115
RTCIAT899_CH00045membrane-bound lytic murein transglycosylase3035
RTCIAT899_CH00050DNA repair protein, Smr/MutS family0000
Showing 1 to 10 of 6292 rows records per page

RPKM statistics:

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WGCNA:

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Gene
Annotation
Module
Correlation
RTCIAT899_CH00005putative phosphotransferase20.985
RTCIAT899_CH00010hypothetical protein40.998
RTCIAT899_CH00015shikimate 5-dehydrogenase2-0.948
RTCIAT899_CH00020dephospho-CoA kinase120.984
RTCIAT899_CH00025DNA polymerase III, epsilon subunit40.955
RTCIAT899_CH00030protein-export chaperone SecB13-0.959
RTCIAT899_CH00035FxsA cytoplasmic membrane protein40.979
RTCIAT899_CH00040import inner membrane translocase subunit Tim4410.957
RTCIAT899_CH00045membrane-bound lytic murein transglycosylase10.922
RTCIAT899_CH00050DNA repair protein, Smr/MutS familyunassignedNaN
Showing 1 to 10 of 6292 rows records per page